simrun ❭ run_existing_synapse_activations ❭ run_existing_synapse_activations

run_existing_synapse_activations¶

simrun.run_existing_synapse_activations.run_existing_synapse_activations(cellParamName, evokedUpParamName, synapseActivation, simName='', dirPrefix='', nprocs=40, tStop=345, silent=True, scale_apical=None, post_hook={}, auto_organize_results_folder=True, cell_generator=None)¶

Recreate and resimulate a network-embedded neuron simulation from a list of Synapse activation files.

Parameters:¶

cellParamName (str) – Path to a Cell parameters file
evokedUpParamName (str) – Path to a Network parameters file
synapseActivationGlob (list) – List of paths to Synapse activation files or globstring
dirprefix (str) – Path to the directory where the simulation results should be stored.
nSweeps (int) – Number of synapse activations per process.
nprocs (int) – Number of independent processes
tStop (float) – Time in ms at which the synaptic input should stop.
silent (bool) – If True, suppresses all output.
scale_apical (float, DEPRECATED) – Scaling factor for the apical dendrite.
post_hook (dict) – Dictionary of functions that are called after the simulation.
auto_organize_results_folder (bool) – If True, the results are stored in a subfolder of the results folder.
cell_generator (function) – Function that generates a cell object.

Returns:¶

Delayed object. Can be computed with arbitrary scheduler.

Return type:¶

dask.delayed

Raises:¶

NotImplementedError – If nprocs is not equal to 1.
RuntimeError – If no files are found on the specified location.
AssertionError – If synapseActivation is not a list.

Deprecated since version 0.1: The scale_apical argument is deprecated and will be removed in a future version. Use the cell\_modify\_functions key in the Cell parameters file instead.