compute_synapse_distances_times¶

single_cell_parser.analyze.synanalysis.compute_synapse_distances_times(fname, cell, t=None, synTypes=None)¶

Save a single_cell_parser.cell.Cell object’s synapse distances and activation times to a .csv file.

The following information is saved:

synapse type: to which presynaptic cell type this synapse belongs to.
synapse ID: unique identifier for the synapse.
soma distance: distance from the synapse to the soma.
section ID: ID of the section of the postsynaptic cell that contains this synapse.
section pt ID: ID of the point in the section that contains this synapse.
dendrite label: label of the dendrite that contains this synapse.
activation times: times at which the synapse was active (ms).

Parameters:¶

fname (str) – The output file name as a ful path, including the file extension. Preferably unique (see e.g. _evoked_activity() for the generation of unique syapse activation filenames)
cell (single_cell_parser.cell.Cell) – Cell object
synTypes (list) – list of synapse types. Default: the keys of the cell.synapses dictionary

Returns:¶

None. Writes out the synapse .csv file to fname.