single_cell_parser ❭ sim_control ❭ SimControl

SimControl¶

class single_cell_parser.sim_control.SimControl(cell=None, sim_time=5, dt=0.001, T=37)¶

Control a current clamp simulation.

Deprecated. Simulations are set up using the high-level interface Simulator. Can still be useful for low-level control with NEURON.

Example

>>> cell = CellParser()
>>> sim = SimControl(cell=cell.get_cell())
>>> sim.go()
>>> sim.show()

Parameters:¶

• cell (neuron.h.Section) – The cell to simulate.

• simTime (float) – Simulation time (ms). Default: 5

• dt (float) – Time step (ms). Default: 0.001

• T (float) – Temperature (Celsius). Default: 37

Attributes:¶

cell¶

The cell to simulate.

Type:¶

neuron.h.Section

simTime¶

Simulation time [ms]. Default: 5 [ms]

Type:¶

float

dt¶

Time step [ms]. Default: 0.001 [ms]

Type:¶

float

T¶

Temperature [C]. Default

Type:¶

float

goAlready¶

Simulation status

Type:¶

bool

h¶

NEURON interface

Type:¶

neuron.h

Methods:¶

set_IClamp(delay, amp, dur)	Initializes values for current clamp.
show()	Plot the voltage trace.
set_recording()	Record the voltage trace.
go(simTime)	Run the simulation.