Dendrogram¶

class visualize.dendrogram.Dendrogram(cell)¶

Plot a dendrogram of a Cell object.

Dendrograms are schematic representations of neuron morphologies.

Example:

>>> d = Dendrogram(cell)
>>> ax = d.plot()
>>> ax.set_xlabel('Distance from soma ($\mu m$)')

cell¶

The cell object.

dendrogram_db¶

A list of _DendrogramSection objects.

dendrogram_db_by_name¶

A dictionary of dendrogram sections by name.

dendrogram_db_by_sec_id¶

A dictionary of dendrogram sections by section ID.

main_bifur_dist¶

The distance to the main bifurcation, in \(\mu m\).

`plot`(ax)	Plot the dendrogram.
`get_parent_by_name`(name)	Get the parent of a dendrogram section by its name.
`_plot_dendrogram`(ax, colormap)	Plot the dendogram on an axes object.