visualize ❭ voltage_trace_visualizer ❭ visualize_vt

visualize_vt¶

visualize.voltage_trace_visualizer.visualize_vt(vt, fig=None, soma_color='k', dend_color='#f7941d', BAC_select=295 + 80, lw=2, **kwargs)¶

Visualize voltage traces from the Hay stimulus protocols.

The results of e.g. biophysics_fitting.simulator.Simulator are nested dictionaries, containing various voltage traces. NEURON simulation results are NEURON vectors. This is a helper method to extract that data and plot out specific voltage traces from those results.

Parameters:¶

vt (dict) – dictionary containing the voltage traces. Must contain the keys:
- ‘BAC.hay_measure’
- ‘bAP.hay_measure’
- ‘StepOne.hay_measure’
- ‘StepTwo.hay_measure’
- ‘StepThree.hay_measure’
fig (matplotlib.figure.Figure) – figure to plot the voltage traces on.
soma_color (str) – color to plot the soma voltage traces.
dend_color (str) – color to plot the dendrite voltage traces.
BAC_select (int) – timepoint for the end of the BAC stimulus.

Returns:¶

None