Welcome to Mockinbird’s documentation!

Contents:

• What is mockinbird?
  • Introduction & Motivation
  • How does it work?
  • Target users
  • Requirements
  • Why measuring a PAR-CLIP mock?
• Installation
  • Via bioconda
  • Manual installation
• Getting started
  • Tutorial
  • Pipeline configuration
• Pipeline modules
  • Preprocessing modules
  • Postprocessing modules
  • Writing your own modules
  • Custom modules in config files
• Object reference
  • CmdPipelineModule
  • Pipeline
  • Configuration
• Notes for developers
  • Building the documentation
• References

Indices and tables

• Index
• Module Index
• Search Page