Welcome to the documentation of PROSSTT!

If you are not interested in the details of PROSSTT use, please refer to the examples on the github page.

Contents:

• What is PROSSTT?
  • Introduction & Motivation
  • How does it work?
  • Target users
• Installation
  • Manual installation
  • Install via Bioconda
• Using PROSSTT
  • Generate tree
  • Simulate average gene expression along tree
  • Sample cells from tree
  • Simulate UMI counts
• Notes for developers
  • Building the documentation

Indices and tables

• Index
• Module Index
• Search Page