##general header##
This ftp site provides access to data for a project to compare introgression patterns in hosue mouse (mm10), rat (rn6) and human (hg19) processed at the Max-Planck Institute for Evolutionary Biology in Ploen (http://www.evolbio.mpg.de/), Department of Evolutionary Genetics (Diethard Tautz). 

The method details how the files were generated can be found at:
https://gitlab.gwdg.de/evolgen/mm10_rn6_hg19_introgression.

##specific information for directory /mm10_rn6_hg19##
The files are organized in sub-directories according to species: house mouse (mm10), rat (rn6) human (hg19) and one folder containing neutral simulations (neutral_simulations).

For example, all data associated with house mouse are in the directory "./mm10_rn6_hg19/mm10/".

The contents of further sub-directories within the species directories (mm10, rn6 and hg19) are:

bam: bam files for each individual plus corresponding index file (.bai)
dK80: dK80 statistics 
fasta: population CONSENSUS FASTA and INDIVIDUAL IUPAC FASTA files
gem_mappability: mappability tracks
simulations: 
trees: whole-genome sliding window neighbor-joining trees based on the CONSENSUS (pop) and INDIVIDUAL (ind) FASTA files
xStats: distance statistics for the CONSENSUS (pop) and INDIVIDUAL (ind) FASTA files

The contents of further sub-directories within the neutral_simulations (neutral_simulations) are:

4Nr0.001: 
4Nr0.01: 
4Nr0.1: 

further subdirectories have their own readme files

- Kristian Ullrich - 03-07-2018 - ullrich@evolbio.mpg.de