tophat_reports v2.0.8b (4050M)
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[samopen] SAM header is present: 66 sequences.
	Loading chr1...done
	Loading chr1_GL456210_random...done
	Loading chr1_GL456211_random...done
	Loading chr1_GL456212_random...done
	Loading chr1_GL456213_random...done
	Loading chr1_GL456221_random...done
	Loading chr2...done
	Loading chr3...done
	Loading chr4...done
	Loading chr4_GL456216_random...done
	Loading chr4_GL456350_random...done
	Loading chr4_JH584292_random...done
	Loading chr4_JH584293_random...done
	Loading chr4_JH584294_random...done
	Loading chr4_JH584295_random...done
	Loading chr5...done
	Loading chr5_GL456354_random...done
	Loading chr5_JH584296_random...done
	Loading chr5_JH584297_random...done
	Loading chr5_JH584298_random...done
	Loading chr5_JH584299_random...done
	Loading chr6...done
	Loading chr7...done
	Loading chr7_GL456219_random...done
	Loading chr8...done
	Loading chr9...done
	Loading chr10...done
	Loading chr11...done
	Loading chr12...done
	Loading chr13...done
	Loading chr14...done
	Loading chr15...done
	Loading chr16...done
	Loading chr17...done
	Loading chr18...done
	Loading chr19...done
	Loading chrM...done
	Loading chrUn_GL456239...done
	Loading chrUn_GL456359...done
	Loading chrUn_GL456360...done
	Loading chrUn_GL456366...done
	Loading chrUn_GL456367...done
	Loading chrUn_GL456368...done
	Loading chrUn_GL456370...done
	Loading chrUn_GL456372...done
	Loading chrUn_GL456378...done
	Loading chrUn_GL456379...done
	Loading chrUn_GL456381...done
	Loading chrUn_GL456382...done
	Loading chrUn_GL456383...done
	Loading chrUn_GL456385...done
	Loading chrUn_GL456387...done
	Loading chrUn_GL456389...done
	Loading chrUn_GL456390...done
	Loading chrUn_GL456392...done
	Loading chrUn_GL456393...done
	Loading chrUn_GL456394...done
	Loading chrUn_GL456396...done
	Loading chrUn_JH584304...done
	Loading chrX...done
	Loading chrX_GL456233_random...done
	Loading chrY...done
	Loading chrY_JH584300_random...done
	Loading chrY_JH584301_random...done
	Loading chrY_JH584302_random...done
	Loading chrY_JH584303_random...done
	Loading ...done
Loaded 170186 junctions
Reporting final accepted alignments...done.
Printing junction BED track...done
Printing insertions...done
Printing deletions...done
Found 135097 junctions from happy spliced reads