data_base ❭ db_initializers ❭ synapse_activation_binning ❭ synapse_activation_postprocess_pandas

synapse_activation_postprocess_pandas¶

data_base.db_initializers.synapse_activation_binning.synapse_activation_postprocess_pandas(pdf, groupby='', prefun=None, applyfun=None, postfun=None)¶

Calculates bins of synapse activation per trial from a pandas dataframe.

Parameters:¶

pdf (pandas.DataFrame) – synapse activation dask dataframe
groupby (str) – species for which subgroups the bins should be calculated. Available values include:
- celltype
- presynaptic\_column
- proximal (soma distance < 500 um)
- EI (Lumping the EXC / INH celltypes together)
- binned\_somadist: synapse counts for all 50 microns
- any column in the specified dataframe.
db (DataBase) – if specified, the result will be computed immediately and saved in the database immediately.
get (dask scheduler) – Specify a dask scheduler for the computation (e.g. dask.distributed.Client.get())
prefun (callable) – A function to preprocess the synapse activation dataframe before binning. The function should take a pandas dataframe and return a pandas dataframe. Default: prefun()
applyfun (callable) – A function to bin the synapse activations. The function should take a pandas dataframe and return a numpy array. Default: applyfun()
postfun (callable) – A function to postprocess the binned synapse activations. The function should take a pandas series and return a numpy array. Default: postfun()

Returns:¶

Dictionary containing numpy arrays, whose rows are sim trials, and columns are time bins. The dictionary keys are defined by groupby.

Return type:¶

dict