visualize ❭ cell_morphology_visualizer ❭ CellMorphologyVisualizer ❭ _write_png_timeseries

CellMorphologyVisualizer._write_png_timeseries¶

visualize.cell_morphology_visualizer.CellMorphologyVisualizer._write_png_timeseries(path, overwrite_frames=False, color='grey', show_synapses=False, show_legend=False, client=None, highlight_section=None, highlight_x=None)¶

Creates a list of images where a neuron morphology color-coded with voltage together with synapse activations are shown for a set of time points. These images will then be used for a time-series visualization (video/gif/animation) and in each image the neuron rotates a bit (3 degrees) over its axis.

The parameters :param self.t_start:, :param self.t_stop: and :param self.t_step: will define the :param self.times_to_show: attribute

Parameters:¶

• - t_start – start time point of our time series visualization

• - t_stop – last time point of our time series visualization

• - t_step – time between the different time points of our visualization

• - path – path were the images should be stored

• - client – dask client for parallelization