visualize ❭ cell_morphology_visualizer ❭ CellMorphologyVisualizer ❭ write_vtk_frames

CellMorphologyVisualizer.write_vtk_frames¶

visualize.cell_morphology_visualizer.CellMorphologyVisualizer.write_vtk_frames(out_name='frame', out_dir='.', t_start=None, t_stop=None, t_step=None, color=None, n_decimals=2, client=None)¶

Write the cell morphology to a series of VTK files.

Parameters:¶

• out_name (str) – name of the file (not path, the file will be generated in out_dir)

• out_dir (str) – path where the images for the gif will be generated

• t_start (float) – start time point of our time series visualization

• t_stop (float) – last time point of our time series visualization

• t_step (float) – time between the different time points of our visualization

• color (str) – color of the cell morphology. Can be a fixed color, or a keyword referring to scalar data of the simulation, such as membrane voltage or ion channel dynamics.

• n_decimals (int) – number of decimals to round the data to. Default is 2.

• client (distributed.client.Client) – dask client for parallelization