NetworkMapper._map_complete_anatomical_realization¶

single_cell_parser.network.NetworkMapper._map_complete_anatomical_realization(weights=None, full_network=False)¶

Connect synapses to active presynaptic cells.

This is step 4 in the creation of a saved network using create_saved_network2(). The synapses should already be created in _assign_anatomical_synapses() (step 1), the presynaptic cells have been created in _create_presyn_cells() (step 2), and their activity should have been generated in _activate_presyn_cells() (step 3).

Assigns synapse weights using _assign_synapse_weights() and connect synapses to presynaptic cells with defined activity.

Parameters:¶

weights (dict | None, optional) – pecific weights for each synapse type. Default: None, in which case they are read from the Network parameters.
full_network (bool) – Defines which cell IDS to use. If True: (non-sequential) cell ids from the network embedding are used. If False, single_cell network embedding from single_cell_input_mapper is used, in which cell ids are sequential.