single_cell_parser ❭ network ❭ NetworkMapper ❭ create_functional_realization

NetworkMapper.create_functional_realization¶

single_cell_parser.network.NetworkMapper.create_functional_realization()¶

Create a new functional connectivity realization from an existing network parameter file based on convergence.

Network parameterfiles already have backlinks to .con files, which contain the anatomical realization of the network. This method creates its own realizations based on the convergence parameter in the network parameters, and saves the resulting .con file and adapted network parameter file in the working directory. It does not assign activity to these presynaptic cells.

See also

_create_functional_connectivity_map() on how the convergence parameter is used for anatomical realizations.

Attention

Give this functional realization a (somewhat) unique name! then save it at the same location as the anatomical realization, and create a network parameter file with the anatomical and corresponding functional realizations already in it.

Attention

Assumes path names to anatomical realization files work from the working directory! So they should be correct relative, or preferably absolute paths.

Returns:¶

None. Writes the resulting .con files and adapted Network parameters file to disk (in contrast to create_network()).