List of references

Genomics / Proteomics

Barré, A., de Daruvar, A., and Blanchard, A. 2004. MolliGen, a database dedicated to the comparative genomics of Mollicutes. Nucl. Acids Res. 32: D307-310.

 

Bai, X., Zhang, J., Ewing, A., et al. 2006. Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J. Bacteriol. 188: 3682-3696.

Chambaud, I., Heilig, R., Ferris, S., et al. 2001. The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis. Nucl. Acids Res. 29: 2145-2153.

Dandekar, T., Huynen, M., Regula, J. T., et al. 2000. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames. Nucl. Acids Res. 28: 3278-3288.

Fraser, C. M., Gocayne, J. D., White, O., et al. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270: 397-403.

Glass, J. I., Lefkowitz, E. J., Glass, J. S., et al. 2000. The complete sequence of the mucosal pathogen Ureaplasma urealyticum. Nature 407: 757-762.

Himmelreich, R., Hilbert, H., Plagens, H., et al. 1996. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucl. Acids Res. 24: 4420-4449.

Himmelreich, R., Plagens, H., Hilbert, H., et al. 1997. Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucl. Acids Res. 25: 701-712.

Jaffe, J. D., Stange-Thomann, N., Smith, C., et al. 2004. The complete genome and proteome of Mycoplasma mobile. Genome Res. 14: 1447-1461.

Oshima, K., Kakizawa, S., Nishigawa, H., et al. 2004. Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nat. Genet. 36: 27-29.

Papazisi, L., Gorton, T. S., Kutish, G., et al. 2003. The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low). Microbiology 149: 2307-2316.

Sasaki, Y., Ishikawa, J., Yamashita, A., et al. 2002. The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans. Nucl. Acids Res. 30: 5293-5300.

Vasconcelos, A. T., Ferreira, H. B., Bizarro, C. V., et al. 2005. Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. J. Bacteriol. 187: 5568-5577.

Wenzel, R., and Herrmann, R. 1989. Cloning of the complete Mycoplasma pneumoniae genome. Nucl. Acid Res. 17: 7029-7040.

Westberg, J., Persson, A., Holmberg, A., et al. 2004. The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). Genome Res. 14: 221-227.

Wise, K. S., Foecking, M. F., Röske, K., et al. 2006. Distinctive repertoire of contingency genes conferring mutation- based phase variation and combinatorial expression of surface lipoproteins in Mycoplasma capricolum subsp. capricolum of the Mycoplasma mycoides phylogenetic cluster. J. Bacteriol. 188: 4926-4941.

 

Jaffe, J. D., Berg, H. C., and Church, G. M. 2004. Proteogenomic mapping as a complementary method to perform genome annotation. Proteomics 4: 59-77.

Proft, T., and Herrmann, R. 1994. Identification and characterization of hitherto unknown Mycoplasma pneumoniae proteins. Mol. Microbiol. 13: 337-348.

Regula, J. T., Ueberle, B., Boguth, G., et al. 2000. Towards a two-dimensional proteome map of Mycoplasma pneumoniae. Electrophoresis 21: 3765-3780.

Su, H.-S., Hutchison III, C. A., and Giddings, M. C. 2007. Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae. BMC Microbiol. 7: 63.

Ueberle, B., Frank, R., and Herrmann, R. 2002. The proteome of the bacterium Mycoplasma pneumoniae: comparing predicted open reading frames to identified gene products. Proteomics 2: 754-764.

Wasinger, V. C., Pollack, J. D., and Humphery-Smith, I. 2000. The proteome of Mycoplasma genitalium. Chaps-soluble component. Eur. J. Biochem. 276: 1571-1582.